[INFO] cloning repository https://github.com/swemeshy/counts_to_csv
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/swemeshy/counts_to_csv" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fswemeshy%2Fcounts_to_csv", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fswemeshy%2Fcounts_to_csv'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9a71982b3e6595f13a325b5e4143a69324e15eaf
[INFO] building swemeshy/counts_to_csv against master#881c1ac408d93bb7adaa3a51dabab9266e82eee8 for issue-85264
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fswemeshy%2Fcounts_to_csv" "/workspace/builds/worker-8/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/swemeshy/counts_to_csv on toolchain 881c1ac408d93bb7adaa3a51dabab9266e82eee8
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/swemeshy/counts_to_csv
[INFO] finished tweaking git repo https://github.com/swemeshy/counts_to_csv
[INFO] tweaked toml for git repo https://github.com/swemeshy/counts_to_csv written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] crate git repo https://github.com/swemeshy/counts_to_csv already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded hdf5-types v0.7.1
[INFO] [stderr]   Downloaded hdf5-derive v0.7.1
[INFO] [stderr]   Downloaded hdf5-sys v0.7.1
[INFO] [stderr]   Downloaded sprs v0.9.3
[INFO] [stderr]   Downloaded winreg v0.8.0
[INFO] [stderr]   Downloaded hdf5 v0.7.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 38cd18ad939edcea8cce4316f9e96739d7515021a1cb1ad1cb2dd273ff80917a
[INFO] running `Command { std: "docker" "start" "-a" "38cd18ad939edcea8cce4316f9e96739d7515021a1cb1ad1cb2dd273ff80917a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "38cd18ad939edcea8cce4316f9e96739d7515021a1cb1ad1cb2dd273ff80917a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "38cd18ad939edcea8cce4316f9e96739d7515021a1cb1ad1cb2dd273ff80917a", kill_on_drop: false }`
[INFO] [stdout] 38cd18ad939edcea8cce4316f9e96739d7515021a1cb1ad1cb2dd273ff80917a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 13c29d72cbdeb7c3e0e3409d60333b236c00efa850df2c49b8acb731d643d1ed
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "13c29d72cbdeb7c3e0e3409d60333b236c00efa850df2c49b8acb731d643d1ed", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.88
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling syn v1.0.63
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]    Compiling regex-syntax v0.6.23
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling rayon-core v1.9.0
[INFO] [stderr]    Compiling serde_derive v1.0.124
[INFO] [stderr]    Compiling smallvec v1.6.1
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling serde v1.0.124
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling ndarray v0.14.0
[INFO] [stderr]    Compiling unicode-segmentation v1.7.1
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling hdf5 v0.7.1
[INFO] [stderr]    Compiling hashbrown v0.9.1
[INFO] [stderr]    Compiling anyhow v1.0.38
[INFO] [stderr]    Compiling ascii v1.0.0
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling number_prefix v0.3.0
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling itoa v0.4.7
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling crossbeam-utils v0.8.3
[INFO] [stderr]    Compiling memoffset v0.6.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling indexmap v1.6.2
[INFO] [stderr]    Compiling rayon v1.5.0
[INFO] [stderr]    Compiling libloading v0.6.7
[INFO] [stderr]    Compiling instant v0.1.9
[INFO] [stderr]    Compiling lock_api v0.4.2
[INFO] [stderr]    Compiling textwrap v0.12.1
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling heck v0.3.2
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.0
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling parking_lot_core v0.8.3
[INFO] [stderr]    Compiling terminal_size v0.1.16
[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling hdf5-types v0.7.1
[INFO] [stderr]    Compiling colored v1.9.3
[INFO] [stderr]    Compiling crossbeam-deque v0.8.0
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling num-complex v0.3.1
[INFO] [stderr]    Compiling parking_lot v0.11.1
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling regex v1.4.4
[INFO] [stderr]    Compiling simple_logger v1.11.0
[INFO] [stderr]    Compiling console v0.14.1
[INFO] [stderr]    Compiling indicatif v0.15.0
[INFO] [stderr]    Compiling hdf5-sys v0.7.1
[INFO] [stderr]    Compiling sprs v0.9.3
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-7e8f787e73884760/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x564a4a1ec320 - std::backtrace_rs::backtrace::libunwind::trace::hdcf4f90f85129e83
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x564a4a1ec320 - std::backtrace_rs::backtrace::trace_unsynchronized::h2669e30cb82f6732
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x564a4a1ec320 - std::sys_common::backtrace::_print_fmt::hfbda19e17f6db318
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x564a4a1ec320 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h1a8751bf59281272
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x564a4a20ae5f - core::fmt::write::h7aa6cd0067dca82a
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/core/src/fmt/mod.rs:1094:17
[INFO] [stderr]      5:     0x564a4a1e97b5 - std::io::Write::write_fmt::hd7dd3a1df9b6befb
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/io/mod.rs:1584:15
[INFO] [stderr]      6:     0x564a4a1ee39b - std::sys_common::backtrace::_print::h551e9ec8a9fa8106
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x564a4a1ee39b - std::sys_common::backtrace::print::ha4b1c5e95fa040b3
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x564a4a1ee39b - std::panicking::default_hook::{{closure}}::h0b34c9ab7fb9f857
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x564a4a1ede7d - std::panicking::default_hook::h3067e8318decd17a
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x564a4a1ee94d - std::panicking::rust_panic_with_hook::h81b8facc50f34daa
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:591:17
[INFO] [stderr]     11:     0x564a4a12f733 - std::panicking::begin_panic::{{closure}}::h43b8b3014e40f09a
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:520:9
[INFO] [stderr]     12:     0x564a4a145049 - std::sys_common::backtrace::__rust_end_short_backtrace::hd93b4f0385327db7
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x564a4a12f669 - std::panicking::begin_panic::h37134bc7e25ecff8
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:519:12
[INFO] [stderr]     14:     0x564a49ff0e59 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h04a4093dd7851dec
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]     15:     0x564a49ff266c - build_script_build::main::h02c0a8ff41f0073a
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9
[INFO] [stderr]     16:     0x564a49ffa72b - core::ops::function::FnOnce::call_once::hf02a508328405a5d
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x564a49ffde8e - std::sys_common::backtrace::__rust_begin_short_backtrace::h06c120447ef8cae2
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x564a49ffbf41 - std::rt::lang_start::{{closure}}::h7131a62f2e9d466a
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/rt.rs:49:18
[INFO] [stderr]     19:     0x564a4a1eed4a - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h3b8c329143d7638a
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x564a4a1eed4a - std::panicking::try::do_call::h4b72c261b4eefc1b
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:379:40
[INFO] [stderr]     21:     0x564a4a1eed4a - std::panicking::try::h703d31b7896cbd49
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:343:19
[INFO] [stderr]     22:     0x564a4a1eed4a - std::panic::catch_unwind::h37cad9b35388a915
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panic.rs:431:14
[INFO] [stderr]     23:     0x564a4a1eed4a - std::rt::lang_start_internal::hab5a8a909af4f90e
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/rt.rs:34:21
[INFO] [stderr]     24:     0x564a49ffbf20 - std::rt::lang_start::h3150d30f47200e02
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/rt.rs:48:5
[INFO] [stderr]     25:     0x564a49ff3b6c - main
[INFO] [stderr]     26:     0x7f8ddef470b3 - __libc_start_main
[INFO] [stderr]     27:     0x564a49febe4e - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "13c29d72cbdeb7c3e0e3409d60333b236c00efa850df2c49b8acb731d643d1ed", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "13c29d72cbdeb7c3e0e3409d60333b236c00efa850df2c49b8acb731d643d1ed", kill_on_drop: false }`
[INFO] [stdout] 13c29d72cbdeb7c3e0e3409d60333b236c00efa850df2c49b8acb731d643d1ed
